The 2013 All-Japan Championships were held from May 11 through May 12 in Tokyo, Japan.
All-Around Final Results
| Rank | Athlete | Club | VT | UB | BB | FX | AA |
| 1 | Natsumi Sasada | Teikyo High School | 13.800 | 14.050 | 14.000 | 13.650 | 55.500 |
| 2 | Yu Minobe | Asahi Seimei | 13.400 | 14.150 | 14.350 | 13.350 | 55.250 |
| 3 | Mai Murakami | Yukio Iketani | 15.100 | 13.750 | 11.800 | 14.500 | 55.150 |
| 4 | Asuka Teramoto | Legyc Sports | 14.100 | 14.900 | 13.700 | 12.300 | 55.000 |
| 5 | Yuki Uchiyama | Smile Gymnastics | 13.850 | 14.150 | 12.550 | 13.850 | 54.400 |
| 6 | Mizuho Nagai | Nippon Sport Science University | 14.950 | 12.850 | 12.500 | 13.450 | 53.750 |
| 7 | Sakura Noda | Asahi Seimei | 13.800 | 12.700 | 13.750 | 13.100 | 53.350 |
| 8 | Wakana Inoue | Mizutori Gymnastics | 14.750 | 12.850 | 12.250 | 13.300 | 53.150 |
| Aiko Sugihara | Hagoromo Gymnastics | 14.000 | 13.150 | 12.550 | 13.450 | 53.150 | |
| 10 | Arisa Tominaga | Kokushikan University | 13.900 | 13.650 | 12.600 | 12.950 | 53.100 |
| 11 | Chinami Otaki | Kokushikan University | 13.600 | 13.850 | 12.750 | 12.800 | 53.000 |
| 12 | Mirai Sekiguchi | Gunma Junior Sports Club | 14.650 | 13.250 | 12.550 | 12.450 | 52.900 |
| 13 | Shizuka Tozawa | Nippon Sport Science University | 14.200 | 13.600 | 11.500 | 13.150 | 52.450 |
| 14 | Yuki Shintake | Hagoromo International University | 12.250 | 14.100 | 11.900 | 13.500 | 51.750 |
| 15 | Sakura Yumoto | Narawa Gymnastics | 13.850 | 13.550 | 11.850 | 12.450 | 51.700 |
| Yuri Ishii | Kyoto Gymnastics | 13.800 | 12.550 | 11.950 | 13.400 | 51.700 | |
| 17 | Mina Sugimura | Kokushikan University | 12.400 | 13.800 | 12.450 | 13.000 | 51.650 |
| 18 | Ai Koyama | University of Tsukuba | 13.700 | 12.250 | 12.550 | 12.500 | 51.000 |
| 19 | Yasuha Matsumura | Chukyo Gymnastics | 13.750 | 12.300 | 12.050 | 12.700 | 50.800 |
| 20 | Maki Ikejiri | Nippon Sport Science University | 13.250 | 12.500 | 12.700 | 12.300 | 50.750 |
| 21 | Sachiko Maeda | Chukyo University | 13.300 | 11.450 | 12.500 | 12.650 | 49.900 |
| 22 | Koko Dobashi | Legyc Sports | 13.800 | 11.100 | 11.600 | 13.150 | 49.650 |
| 23 | Haruko Hasebe | Osaka University | 13.200 | 11.950 | 11.800 | 12.400 | 49.350 |
| 24 | Erica Danko | Osaka University | 13.800 | 11.000 | 8.950 | 11.950 | 45.700 |